[Ben Michaud]

I recently used pulse to create a new ME4S 9.0 profile. I wonder if this may be the cause. Here are the errors I have in the event error log:
__________________________________________

eclipse.buildId=unknown
java.version=1.6.0_13
java.vendor=Sun Microsystems Inc.
BootLoader constants: OS=win32, ARCH=x86, WS=win32, NL=en_US
Command-line arguments: -os win32 -ws win32 -arch x86

Error
Wed May 11 11:03:00 EDT 2011
Could not load repository template extension repository

__________________________________

eclipse.buildId=unknown
java.version=1.6.0_13
java.vendor=Sun Microsystems Inc.
BootLoader constants: OS=win32, ARCH=x86, WS=win32, NL=en_US
Command-line arguments: -os win32 -ws win32 -arch x86

Error
Wed May 11 11:02:25 EDT 2011
Unable to create view ID org.eclipse.jdt.ui.PackageExplorer: 2

java.lang.ArrayIndexOutOfBoundsException: 2
at org.eclipse.emf.common.util.BasicEList.assign(BasicEList.java:124)
at org.eclipse.emf.common.util.BasicEList.addUnique(BasicEList.java:424)
at org.eclipse.emf.common.util.AbstractEList.add(AbstractEList.java:307)
at org.eclipse.emf.common.notify.impl.BasicNotifierImpl$EAdapterList.add(BasicNotifierImpl.java:142)
at org.eclipse.wst.common.componentcore.internal.StructureEdit.getEclipseResource(StructureEdit.java:251)
at org.eclipse.wst.common.componentcore.internal.impl.ResourceTreeNode.findMatchingVirtualPathsSet(ResourceTreeNode.java:195)
at org.eclipse.wst.common.componentcore.internal.impl.ResourceTreeNode.findModuleResourcesSet(ResourceTreeNode.java:178)
at org.eclipse.wst.common.componentcore.internal.impl.ResourceTreeNode.findModuleResources(ResourceTreeNode.java:143)
at org.eclipse.wst.common.componentcore.internal.resources.VirtualResource.getProjectRelativePaths(VirtualResource.java:132)
at org.eclipse.wst.common.componentcore.internal.resources.VirtualFile.getUnderlyingFiles(VirtualFile.java:104)
at org.eclipse.wst.common.componentcore.internal.resources.VirtualFile.getUnderlyingResources(VirtualFile.java:93)
at org.eclipse.wst.common.componentcore.internal.resources.VirtualResource.exists(VirtualResource.java:88)
at org.eclipse.jst.j2ee.componentcore.J2EEModuleVirtualComponent.getManifestClasspath(J2EEModuleVirtualComponent.java:174)
at org.eclipse.jst.j2ee.componentcore.J2EEModuleVirtualComponent.getManifestReferences(J2EEModuleVirtualComponent.java:322)
at org.eclipse.jst.j2ee.componentcore.J2EEModuleVirtualComponent.getReferences(J2EEModuleVirtualComponent.java:129)
at org.eclipse.jst.j2ee.internal.common.classpath.J2EEComponentClasspathContainer.update(J2EEComponentClasspathContainer.java:200)
at org.eclipse.jst.j2ee.internal.common.classpath.J2EEComponentClasspathContainer.install(J2EEComponentClasspathContainer.java:351)
at org.eclipse.jst.j2ee.internal.common.classpath.J2EEComponentClasspathInitializer.initialize(J2EEComponentClasspathInitializer.java:47)
at org.eclipse.jdt.internal.core.JavaModelManager.initializeContainer(JavaModelManager.java:2642)
at org.eclipse.jdt.internal.core.JavaModelManager.getClasspathContainer(JavaModelManager.java:1813)
at org.eclipse.jdt.core.JavaCore.getClasspathContainer(JavaCore.java:2652)
at org.eclipse.jdt.internal.core.JavaProject.resolveClasspath(JavaProject.java:2578)
at org.eclipse.jdt.internal.core.JavaProject.resolveClasspath(JavaProject.java:2679)
at org.eclipse.jdt.internal.core.JavaProject.getResolvedClasspath(JavaProject.java:1866)
at org.eclipse.jdt.internal.core.JavaProject.buildStructure(JavaProject.java:424)
at org.eclipse.jdt.internal.core.Openable.generateInfos(Openable.java:258)
at org.eclipse.jdt.internal.core.Openable.openAncestors(Openable.java:504)
at org.eclipse.jdt.internal.core.Openable.generateInfos(Openable.java:240)
at org.eclipse.jdt.internal.core.JavaElement.openWhenClosed(JavaElement.java:515)
at org.eclipse.jdt.internal.core.JavaElement.getElementInfo(JavaElement.java:252)
at org.eclipse.jdt.internal.core.JavaElement.getElementInfo(JavaElement.java:238)
at org.eclipse.jdt.internal.core.PackageFragmentRoot.getKind(PackageFragmentRoot.java:477)
at org.eclipse.jdt.internal.core.PackageFragment.getKind(PackageFragment.java:290)
at org.eclipse.jdt.internal.core.PackageFragment.validateExistence(PackageFragment.java:506)
at org.eclipse.jdt.internal.core.Openable.exists(Openable.java:206)
at org.eclipse.jdt.internal.core.PackageFragment.exists(PackageFragment.java:174)
at org.eclipse.jdt.ui.StandardJavaElementContentProvider.exists(StandardJavaElementContentProvider.java:451)
at org.eclipse.jdt.ui.StandardJavaElementContentProvider.getParent(StandardJavaElementContentProvider.java:249)
at org.eclipse.jface.viewers.AbstractTreeViewer.getParentElement(AbstractTreeViewer.java:1653)
at org.eclipse.jface.viewers.TreeViewer.getParentElement(TreeViewer.java:606)
at org.eclipse.jface.viewers.AbstractTreeViewer.internalExpand(AbstractTreeViewer.java:1580)
at org.eclipse.jface.viewers.AbstractTreeViewer.internalExpand(AbstractTreeViewer.java:1582)
at org.eclipse.jface.viewers.AbstractTreeViewer.setSelectionToWidget(AbstractTreeViewer.java:2463)
at org.eclipse.jface.viewers.StructuredViewer.setSelectionToWidget(StructuredViewer.java:1711)
at org.eclipse.jface.viewers.AbstractTreeViewer.setSelectionToWidget(AbstractTreeViewer.java:2903)
at org.eclipse.jface.viewers.StructuredViewer.setSelection(StructuredViewer.java:1667)
at org.eclipse.jface.viewers.TreeViewer.setSelection(TreeViewer.java:1124)
at org.eclipse.jdt.internal.ui.packageview.PackageExplorerPart.showInput(PackageExplorerPart.java:1050)
at org.eclipse.jdt.internal.ui.packageview.PackageExplorerPart.editorActivated(PackageExplorerPart.java:999)
at org.eclipse.jdt.internal.ui.packageview.PackageExplorerPart.setLinkingEnabled(PackageExplorerPart.java:1271)
at org.eclipse.jdt.internal.ui.packageview.PackageExplorerPart.createPartControl(PackageExplorerPart.java:548)
at org.eclipse.ui.internal.ViewReference.createPartHelper(ViewReference.java:367)
at org.eclipse.ui.internal.ViewReference.createPart(ViewReference.java:226)
at org.eclipse.ui.internal.WorkbenchPartReference.getPart(WorkbenchPartReference.java:595)
at org.eclipse.ui.internal.WorkbenchPage$ActivationList.setActive(WorkbenchPage.java:4212)
at org.eclipse.ui.internal.WorkbenchPage$18.runWithException(WorkbenchPage.java:3271)
at org.eclipse.ui.internal.StartupThreading$StartupRunnable.run(StartupThreading.java:31)
at org.eclipse.swt.widgets.RunnableLock.run(RunnableLock.java:35)
at org.eclipse.swt.widgets.Synchronizer.runAsyncMessages(Synchronizer.java:134)
at org.eclipse.swt.widgets.Display.runAsyncMessages(Display.java:3885)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3506)
at org.eclipse.ui.application.WorkbenchAdvisor.openWindows(WorkbenchAdvisor.java:803)
at org.eclipse.ui.internal.Workbench$28.runWithException(Workbench.java:1384)
at org.eclipse.ui.internal.StartupThreading$StartupRunnable.run(StartupThreading.java:31)
at org.eclipse.swt.widgets.RunnableLock.run(RunnableLock.java:35)
at org.eclipse.swt.widgets.Synchronizer.runAsyncMessages(Synchronizer.java:134)
at org.eclipse.swt.widgets.Display.runAsyncMessages(Display.java:3885)
at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:3506)
at org.eclipse.ui.internal.Workbench.runUI(Workbench.java:2316)
at org.eclipse.ui.internal.Workbench.access$4(Workbench.java:2221)
at org.eclipse.ui.internal.Workbench$5.run(Workbench.java:500)
at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:332)
at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:493)
at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:149)
at org.eclipse.ui.internal.ide.application.IDEApplication.start(IDEApplication.java:113)
at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:194)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:110)
at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:79)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:368)
at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:179)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:559)
at org.eclipse.equinox.launcher.Main.basicRun(Main.java:514)
at org.eclipse.equinox.launcher.Main.run(Main.java:1311)

__________________________________________
eclipse.buildId=unknown
java.version=1.6.0_13
java.vendor=Sun Microsystems Inc.
BootLoader constants: OS=win32, ARCH=x86, WS=win32, NL=en_US
Command-line arguments: -os win32 -ws win32 -arch x86

This is a continuation of log file C:\work\workspaces\Infrastructure\.metadata\.bak_0.log
Created Time: 2011-05-10 17:41:37.516

Error
Tue May 10 17:41:37 EDT 2011
An error occurred while traversing resources.

org.eclipse.core.internal.resources.ResourceException(/3MHISCommon_util)[566]: java.lang.ClassCastException: org.eclipse.dali.packaging.internal.resource.PackagingResourceImpl cannot be cast to org.eclipse.jpt.core.resource.xml.JpaXmlResource
at org.eclipse.jpt.core.resource.AbstractXmlResourceProvider.getXmlResource(AbstractXmlResourceProvider.java:114)
at org.eclipse.jpt.core.internal.PersistenceResourceModelProvider.buildResourceModel(PersistenceResourceModelProvider.java:48)
at org.eclipse.jpt.core.internal.PersistenceResourceModelProvider.buildResourceModel(PersistenceResourceModelProvider.java:1)
at org.eclipse.jpt.core.internal.platform.GenericJpaPlatform.buildResourceModel(GenericJpaPlatform.java:118)
at org.eclipse.jpt.core.internal.platform.GenericJpaPlatform.buildJpaFile(GenericJpaPlatform.java:112)
at org.eclipse.jpt.core.internal.platform.GenericJpaPlatform.buildJpaFile(GenericJpaPlatform.java:108)
at org.eclipse.jpt.core.internal.AbstractJpaProject.addJpaFile_(AbstractJpaProject.java:485)
at org.eclipse.jpt.core.internal.AbstractJpaProject$InitialResourceProxyVisitor.visit(AbstractJpaProject.java:254)
at org.eclipse.core.internal.resources.Resource$1.visitElement(Resource.java:60)
at org.eclipse.core.internal.watson.ElementTreeIterator.doIteration(ElementTreeIterator.java:82)
at org.eclipse.core.internal.watson.ElementTreeIterator.doIteration(ElementTreeIterator.java:86)
at org.eclipse.core.internal.watson.ElementTreeIterator.doIteration(ElementTreeIterator.java:86)
at org.eclipse.core.internal.watson.ElementTreeIterator.doIteration(ElementTreeIterator.java:86)
at org.eclipse.core.internal.watson.ElementTreeIterator.iterate(ElementTreeIterator.java:127)
at org.eclipse.core.internal.resources.Resource.accept(Resource.java:70)
at org.eclipse.jpt.core.internal.AbstractJpaProject.<init>(AbstractJpaProject.java:195)
at org.eclipse.jpt.core.internal.GenericJpaProject.<init>(GenericJpaProject.java:25)
at org.eclipse.jpt.core.internal.platform.GenericJpaFactory.buildJpaProject(GenericJpaFactory.java:267)
at org.eclipse.jpt.core.internal.GenericJpaModel$DefaultJpaProjectHolder.buildJpaProject(GenericJpaModel.java:420)
at org.eclipse.jpt.core.internal.GenericJpaModel$DefaultJpaProjectHolder.jpaProject(GenericJpaModel.java:408)
at org.eclipse.jpt.core.internal.GenericJpaModel.getJpaProject(GenericJpaModel.java:75)
at org.eclipse.jpt.core.internal.JpaModelManager.getJpaProject(JpaModelManager.java:167)
at org.eclipse.jpt.core.JptCorePlugin.getJpaProject(JptCorePlugin.java:189)
at org.eclipse.jpt.core.internal.validation.JpaValidator.validationMessages(JpaValidator.java:98)
at org.eclipse.jpt.core.internal.validation.JpaValidator.validate(JpaValidator.java:88)
at org.eclipse.jpt.core.internal.validation.JpaValidator.validate(JpaValidator.java:69)
at org.eclipse.wst.validation.Validator$V2.validate(Validator.java:1132)
at org.eclipse.wst.validation.internal.ValManager.validate(ValManager.java:732)
at org.eclipse.wst.validation.internal.ValManager$1.visit(ValManager.java:695)
at org.eclipse.wst.validation.internal.ValManager.accept(ValManager.java:809)
at org.eclipse.wst.validation.internal.ValManager.validate(ValManager.java:699)
at org.eclipse.wst.validation.internal.ValBuilderJob$Visitor.visit(ValBuilderJob.java:322)
at org.eclipse.core.internal.events.ResourceDelta.accept(ResourceDelta.java:68)
at org.eclipse.core.internal.events.ResourceDelta.accept(ResourceDelta.java:79)
at org.eclipse.core.internal.events.ResourceDelta.accept(ResourceDelta.java:79)
at org.eclipse.core.internal.events.ResourceDelta.accept(ResourceDelta.java:79)
at org.eclipse.core.internal.events.ResourceDelta.accept(ResourceDelta.java:79)
at org.eclipse.core.internal.events.ResourceDelta.accept(ResourceDelta.java:79)
at org.eclipse.core.internal.events.ResourceDelta.accept(ResourceDelta.java:79)
at org.eclipse.core.internal.events.ResourceDelta.accept(ResourceDelta.java:79)
at org.eclipse.core.internal.events.ResourceDelta.accept(ResourceDelta.java:48)
at org.eclipse.wst.validation.internal.ValBuilderJob.deltaBuild(ValBuilderJob.java:210)
at org.eclipse.wst.validation.internal.ValBuilderJob.run(ValBuilderJob.java:178)
at org.eclipse.wst.validation.internal.ValBuilderJob.runInWorkspace(ValBuilderJob.java:125)
at org.eclipse.core.internal.resources.InternalWorkspaceJob.run(InternalWorkspaceJob.java:38)
at org.eclipse.core.internal.jobs.Worker.run(Worker.java:55)

___________________________________________

eclipse.buildId=unknown
java.version=1.6.0_13
java.vendor=Sun Microsystems Inc.
BootLoader constants: OS=win32, ARCH=x86, WS=win32, NL=en_US
Command-line arguments: -os win32 -ws win32 -arch x86

This is a continuation of log file C:\work\workspaces\Infrastructure\.metadata\.bak_0.log
Created Time: 2011-05-10 17:41:37.516

Error
Tue May 10 17:41:37 EDT 2011
An error occurred while traversing resources.

java.lang.ClassCastException: org.eclipse.dali.packaging.internal.resource.PackagingResourceImpl cannot be cast to org.eclipse.jpt.core.resource.xml.JpaXmlResource
at org.eclipse.jpt.core.resource.AbstractXmlResourceProvider.getXmlResource(AbstractXmlResourceProvider.java:114)
at org.eclipse.jpt.core.internal.PersistenceResourceModelProvider.buildResourceModel(PersistenceResourceModelProvider.java:48)
at org.eclipse.jpt.core.internal.PersistenceResourceModelProvider.buildResourceModel(PersistenceResourceModelProvider.java:1)
at org.eclipse.jpt.core.internal.platform.GenericJpaPlatform.buildResourceModel(GenericJpaPlatform.java:118)
at org.eclipse.jpt.core.internal.platform.GenericJpaPlatform.buildJpaFile(GenericJpaPlatform.java:112)
at org.eclipse.jpt.core.internal.platform.GenericJpaPlatform.buildJpaFile(GenericJpaPlatform.java:108)
at org.eclipse.jpt.core.internal.AbstractJpaProject.addJpaFile_(AbstractJpaProject.java:485)
at org.eclipse.jpt.core.internal.AbstractJpaProject$InitialResourceProxyVisitor.visit(AbstractJpaProject.java:254)
at org.eclipse.core.internal.resources.Resource$1.visitElement(Resource.java:60)
at org.eclipse.core.internal.watson.ElementTreeIterator.doIteration(ElementTreeIterator.java:82)
at org.eclipse.core.internal.watson.ElementTreeIterator.doIteration(ElementTreeIterator.java:86)
at org.eclipse.core.internal.watson.ElementTreeIterator.doIteration(ElementTreeIterator.java:86)
at org.eclipse.core.internal.watson.ElementTreeIterator.doIteration(ElementTreeIterator.java:86)
at org.eclipse.core.internal.watson.ElementTreeIterator.iterate(ElementTreeIterator.java:127)
at org.eclipse.core.internal.resources.Resource.accept(Resource.java:70)
at org.eclipse.jpt.core.internal.AbstractJpaProject.<init>(AbstractJpaProject.java:195)
at org.eclipse.jpt.core.internal.GenericJpaProject.<init>(GenericJpaProject.java:25)
at org.eclipse.jpt.core.internal.platform.GenericJpaFactory.buildJpaProject(GenericJpaFactory.java:267)
at org.eclipse.jpt.core.internal.GenericJpaModel$DefaultJpaProjectHolder.buildJpaProject(GenericJpaModel.java:420)
at org.eclipse.jpt.core.internal.GenericJpaModel$DefaultJpaProjectHolder.jpaProject(GenericJpaModel.java:408)
at org.eclipse.jpt.core.internal.GenericJpaModel.getJpaProject(GenericJpaModel.java:75)
at org.eclipse.jpt.core.internal.JpaModelManager.getJpaProject(JpaModelManager.java:167)
at org.eclipse.jpt.core.JptCorePlugin.getJpaProject(JptCorePlugin.java:189)
at org.eclipse.jpt.core.internal.validation.JpaValidator.validationMessages(JpaValidator.java:98)
at org.eclipse.jpt.core.internal.validation.JpaValidator.validate(JpaValidator.java:88)
at org.eclipse.jpt.core.internal.validation.JpaValidator.validate(JpaValidator.java:69)
at org.eclipse.wst.validation.Validator$V2.validate(Validator.java:1132)
at org.eclipse.wst.validation.internal.ValManager.validate(ValManager.java:732)
at org.eclipse.wst.validation.internal.ValManager$1.visit(ValManager.java:695)
at org.eclipse.wst.validation.internal.ValManager.accept(ValManager.java:809)
at org.eclipse.wst.validation.internal.ValManager.validate(ValManager.java:699)
at org.eclipse.wst.validation.internal.ValBuilderJob$Visitor.visit(ValBuilderJob.java:322)
at org.eclipse.core.internal.events.ResourceDelta.accept(ResourceDelta.java:68)
at org.eclipse.core.internal.events.ResourceDelta.accept(ResourceDelta.java:79)
at org.eclipse.core.internal.events.ResourceDelta.accept(ResourceDelta.java:79)
at org.eclipse.core.internal.events.ResourceDelta.accept(ResourceDelta.java:79)
at org.eclipse.core.internal.events.ResourceDelta.accept(ResourceDelta.java:79)
at org.eclipse.core.internal.events.ResourceDelta.accept(ResourceDelta.java:79)
at org.eclipse.core.internal.events.ResourceDelta.accept(ResourceDelta.java:79)
at org.eclipse.core.internal.events.ResourceDelta.accept(ResourceDelta.java:79)
at org.eclipse.core.internal.events.ResourceDelta.accept(ResourceDelta.java:48)
at org.eclipse.wst.validation.internal.ValBuilderJob.deltaBuild(ValBuilderJob.java:210)
at org.eclipse.wst.validation.internal.ValBuilderJob.run(ValBuilderJob.java:178)
at org.eclipse.wst.validation.internal.ValBuilderJob.runInWorkspace(ValBuilderJob.java:125)
at org.eclipse.core.internal.resources.InternalWorkspaceJob.run(InternalWorkspaceJob.java:38)
at org.eclipse.core.internal.jobs.Worker.run(Worker.java:55)

[Ben Michaud]

This was fixed by restarting eclipse.

[jkennedy]

Thanks for updating us on the work around, sorry you experienced this issue.

[Author]

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