adampatterson,
I could not replicate the issue at my end on MyEclipse Blue 10.6 and WAS 7/8.
I modified the archive names from the Add and Remove Modules dialog (Right click on the EAR > MyEclipse > Add and Remove modules).
Attached is the screenshot for your reference.
If this is not the issue you are seeing, then please give us steps in detail to help us replicate the issue at our end.
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