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I got Version: 4.0.100
Build id: 20051103-4.1-Milestone1
For some reason, when I select a java method from outline or search results, it only displays that method, not the rest of the code. It looks as if this started happening when I upgraded to the aforementioned build.
MyEclipse does not mess with the Java Editor or JDT in anyway.
On the Eclipse toolbar, there is a toggle button which says “Show Source of Selected Element Only” – perhaps you have that selected?