MarkReid ,
Sorry that you are seeing this issue. I could not replicate the issue at my end. The tutorials are based on previous versions of MyEclipse but you should still be able to see the “Add JPA capabilities” in the context menu.
1) Go to Help > MyEclipse Configuration Center > Dashboard and check if the option “Hibernate/JPA support for MyEclipse ” is installed or not. If not then please check it and follow the wizard to install it.
2) Can you create a new web project and check if you see the “Add JPA capabilities” in the MyEclipse context menu?
Let us know how it works for you.