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When you have multiple spring cnfig files the beans defined in another file are not resolved – they through warnings and the graph view does not take all the files into account. I loaded all of the files in the project spring config section.
You just need to make sure to add all the Spring config files to the list of bean config files under the project properties, then MyEclipse will parse them and resolve references correctly.
I have them loaded in the MyEclipse/Spring/Beans/Config Files dialog. Same as in your screen shot – checked them and they have been there during the issue.
Hmm… can you pair down the project to just the beans and config files causing the problems and then export it to an archive and email it to me? support@genuitec.com ATTN Riyad?
Not sure if this is the correct answer but i used import and all is resolved – even though Spring itself did not require the import to successfully run the application.